hubmapconsortium / asctb-figures

How to generate ASCT+B Graph Figures
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FInd examples - current or historic - in ASCT_B tabs of general tissue term in specific loc #19

Open dosumis opened 6 months ago

dosumis commented 6 months ago

HIstorically I believe we have had examples with 'mesenchyme' - should be findable in logs if we have a way to grep through these files historically in repo.

dosumis commented 6 months ago
Update - Aleix has example from Kidney: AS 1 LABEL AS 1 ID AS 2 LABEL AS 2 ID AS 3 LABEL AS 3 ID AS 4 LABEL AS 4 ID
kidney UBERON:0002113 kidney vasculature UBERON:0006544 kidney blood vessel UBERON:0003517 endothelium UBERON:0001986

https://docs.google.com/presentation/d/1xSt9xhrGS5SwsijGpyJdzuyJw1zOprqkA0nXMvNI588/edit#slide=id.g2b3864ab9f5_0_0

Better if we extend to include cell types.

Also some examples on old tickets analysing tables:

e.g. 'lymphatic vessels' here: https://github.com/obophenotype/asct-b_validation/issues/25 (see also other Review tickets)