Product dev epic

[dosumis]

EPIC

We need some more work on software products to promote in paper.

• [x] #9 Update
• [ ] #10
  • This needs to work entirely within pipeline. Suggest queries Ubergraph by default & uses networkX for transitive reduction - see https://github.com/INCATools/pandasaurus_cxg/blob/9521dd4133925c489a964d9b36d9df4813173f8a/pandasaurus_cxg/graph_generator/graph_generator.py#L319 for precedent.
• [ ] #11 What would a CookieCutter or GitHub template pipeline do?
  • Run simple validation
  • Generate graphs showing compliance/alignment with CL, with suggestions for filling in gaps and options to include complete view @anitacaron to check whether this can be folded into validation lib without Makefile pipeline using OAK CL tool.
  • Generate OWL view (This differs from ROBOT view generated from seed if option chose to use input + suggestions only where input is invalid)