search

hubmapconsortium / codex-pipeline

CODEX data processing code
GNU General Public License v3.0
11 stars 4 forks source link

Prune outputs of pipeline #12

Closed mruffalo closed 3 years ago

mruffalo commented 4 years ago

We don't necessarily need to expose the raw outputs of Cytokit as a "final" output of the pipeline -- just our conversion of those files to OME-TIFF. Remove the Cytokit processor and operator output, plus or minus some other files.

mkeays commented 4 years ago

I can do this today, I think we just need the for_viz_dir directory and the two containing the files linked therein, sprm_output_dir and ome_tiff_output.

mkeays commented 4 years ago

Think I will also keep the experiment_config. Doesn't have to be part of the files for the UI but may be of interest to some users.