hubmapconsortium / codex-pipeline

CODEX data processing code
GNU General Public License v3.0
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Increase the memory_limit parameter #2

Closed mkeays closed 3 years ago

mkeays commented 4 years ago

We appear to have ~250GB RAM on the GPU node according to free -g, so we could increase the memory_limit parameter in the Cytokit config processor.args field, to limit warnings from Dask, e.g.

distributed.worker - WARNING - Memory use is high but worker has no data to store to disk.  Perhaps some other process is leaking memory?  Process memory: 54.30 GB -- Worker memory limit: 64.00 GB