Fix manifest(s) for split pipeline

hubmapconsortium / codex-pipeline

CODEX data processing code

GNU General Public License v3.0

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Fix manifest(s) for split pipeline #33

Closed mruffalo closed 2 years ago

mruffalo commented 2 years ago

We split the pipeline into three "entry point" CWL files which allows running only Cytokit on GPU nodes, and previous/subsequent steps on CPU-only compute nodes. These separate CWL files do not have pipeline manifests, though, so no expression images or segmentation masks are indexed. Fix this.

mruffalo commented 2 years ago

Fixed in https://github.com/hubmapconsortium/codex-pipeline/commit/ae0e6b3f1bba20ed545c479865d275ee5abeda2f and released in v2.4.1.