hubmapconsortium / codex-pipeline

CODEX data processing code
GNU General Public License v3.0
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Update pipeline to work with modern dependencies #41

Open mruffalo opened 1 year ago

mruffalo commented 1 year ago

The pipeline code relies on some older package versions, especially aicsimageio 3.3.x, and this is an issue in updating the base Docker images or Anaconda version. Update the pipeline code and pin newer dependencies as appropriate, to allow building under current Anaconda/etc.

(Implement the opposite of https://github.com/hubmapconsortium/codex-pipeline/pull/40.)