hubmapconsortium / hra-workflows-runner

hra-workflows-runner: Pipeline to download, annotate, and summarize experimental data using hra-workflows
MIT License
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Add script to concatenate all cell summaries for a dataset listing #22

Closed bherr2 closed 10 months ago

bherr2 commented 10 months ago

This could run somewhere around (or in) 40-summarize-results.sh. It will take the list of all datasets for a listing and concatenate all cell-sumamaries.jsonld into the full cell-summaries.jsonld file that contains all cell summaries for all dataset (with one cell summary per technology where applicable). It should be placed in the raw-data in the dataset directory associated with it.