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hubmapconsortium / hubmap-api-py-client

Python client for the Cells API
MIT License
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When can genomic_modality='atac' be used? #8

Closed mccalluc closed 3 years ago

mccalluc commented 3 years ago

I was expecting to be able to be able to replace rna with atac:

>>> client.select_cells(where='gene', has='VIM>0', genomic_modality='atac')
Traceback (most recent call last):
...
json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
SFD5311 commented 3 years ago

Once I load the ATAC data into the dev database instance, that will be doable.

mccalluc commented 3 years ago

@SFD5311 : Can you update here when the data is available?

SFD5311 commented 3 years ago

Yes, definitely will do.

SFD5311 commented 3 years ago

ATAC data are loaded onto the dev instance now.