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hubmapconsortium / ingest-api

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Add wave 3 + HCA data providers #62

Closed shirey closed 3 years ago

shirey commented 3 years ago

Add Data Providers for Wave 3 plus HCA to ingest-ui/ingest-api/entity-api/commons per https://docs.google.com/spreadsheets/d/1BLXxy8hOv13W1JFTzXb3L7EoaitqWig6GnrOCaSee78/edit?usp=sharing

yuanzhou commented 3 years ago

Will also need to create the UUID dir on PSC file system

yuanzhou commented 3 years ago

@shirey in addition to all the 10 newly added data providers, I also noticed that the displayname of University of California San Diego TMC is renamed to University of California San Diego TMC focusing on kidney. Are we supposed to renamed the directory name on the PSC file system too?

Below are the 10 new directories I'll be creating:

mkdir "TMC - Children's Hospital of Philadelphia"
mkdir "TMC - University of Connecticut"
mkdir "TMC - University of California San Diego focusing on female reproduction"
mkdir "TMC - University of Pennsylvania"
mkdir "TTD - Pacific Northwest National Laboratory"
mkdir "TTD - Pacific Northwest National Laboratory and Northwestern University"
mkdir "TTD - Penn State University and Columbia University"
mkdir "TTD - University of San Diego and City of Hope"
mkdir "TTD - Yale University"
mkdir "EXT - Human Cell Atlas"

And target locations:

/hive/hubmap-dev/data/protected
/hive/hubmap-dev/data/consortium

/hive/hubmap-test/data/protected
/hive/hubmap-test/data/consortium

/hive/hubmap-stage/data/protected
/hive/hubmap-stage/data/consortium

/hive/hubmap/data/protected
/hive/hubmap/data/consortium

The /public directory doesn't have these TMC sub directories, instead just direct UUID sub directories.

yuanzhou commented 3 years ago

Changed back to old displayname: University of California San Diego TMC via https://github.com/hubmapconsortium/commons/commit/da9b1494332250bded832f0987721893c68b69a9

No changes needed for ingest-ui groups per Bill's comment:

I think the UI can leave the other name in place.

shirey commented 3 years ago

This needs to be fully tested against users with all types of group memberships. A blip was noticed by Zhou when, possibly, a user is a member of a single lab/data provider group and the data admin group.