Missing `metadata` in two datasets

icaoberg commented 1 year ago

The following datasets have missing the metadata fields in the metadata TSV files.

Issue. Missing child metadata in ingest_metadata.
Solution. Ingest the two metadata files in these two datasets. The metadata files are present.

+------+-----------------+-----------+----------------+-------------+------------------+----------------+
|      | hubmap_id       | status    | is_protected   | data_type   |   assay_category | has_metadata   |
+======+=================+===========+================+=============+==================+================+
|  645 | HBM347.RFGL.437 | Published | True           | SNAREseq    |              nan | False          |
+------+-----------------+-----------+----------------+-------------+------------------+----------------+
| 1436 | HBM773.WCXC.264 | Published | True           | snRNAseq    |              nan | False          |
+------+-----------------+-----------+----------------+-------------+------------------+----------------+

Comment this is necessary for the dbGaP submission.

j-uranic commented 1 year ago

@icaoberg My understanding is that data ingest is not currently working as of today 1/20/23, based on the ones I tried to run this morning, so I'm assuming we would need to have that functional before we can resolve this issue. I'm not sure what the steps are to update a dataset with a "Published" status, if anyone can share their advice I would be happy to assist with this.

icaoberg commented 1 year ago

@j-uranic from my understanding this is similar as #3 . I think once we re-process the dataset the fields in both tickets will be completed.

hubmapconsortium / metadata-consistency

Missing `metadata` in two datasets #2