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hubmapconsortium
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multiome-rna-atac-pipeline
Pipeline for unified processing of joint RNA-seq and ATAC-seq measurements for single cells
GNU General Public License v3.0
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Expand `README.md`
#15
mruffalo
opened
1 week ago
0
Sfd5311/mudata qc fix
#14
SFD5311
closed
3 weeks ago
0
Adding organism parameter to multiome pipeline
#13
SFD5311
closed
1 month ago
0
Sfd5311/qc measures
#12
SFD5311
closed
1 month ago
0
Fixing parameter type
#11
SFD5311
closed
1 month ago
0
Sfd5311/rev comp logic
#10
SFD5311
closed
1 month ago
0
Update the cwl step that pipeline points to for atac-seq
#9
pennycuda
closed
3 months ago
0
Change cwl step in multiome to point to the correct atac-seq step
#8
pennycuda
closed
3 months ago
0
Bump sc-atac-seq-pipeline version to v2.1.3
#7
SFD5311
closed
3 months ago
0
Add pipeline manifest
#6
SFD5311
opened
8 months ago
0
Release initial pipeline verison (like `v0.1`) for HIVE integration testing
#5
mruffalo
opened
1 year ago
0
Wrap analysis code in this repo in CWL steps, reference in overall `pipeline.cwl`
#4
mruffalo
opened
1 year ago
0
Add overall `pipeline.cwl` referencing steps in submodules and this repo
#3
mruffalo
closed
11 months ago
1
Add analysis code in (not yet existent) `bin` directory, using `muon` package
#2
mruffalo
opened
1 year ago
1
Add `docker_images.txt` for images native to this repository
#1
mruffalo
opened
1 year ago
0