search

hubmapconsortium / ontology-api

The HuBMAP Ontology Service
MIT License
4 stars 3 forks source link

use KG to create data for anatomy faceted search tree for portal #134

Open computationdoc opened 2 years ago

computationdoc commented 2 years ago

This is a data transform to support anatomy faceted search tree for portal (please link Chuck McCallum's spec/issue here).

Steps are:

  1. query provenance/entity for each anatomic part instantiated in RUI JSON (UBERON and FMA items)
  2. unique results
  3. query KG for each result for path in ASCT+B to top ASCT+B anatomy node
  4. remove vascular rows in path results (this is done by removing all that have top vascular node in position 2)
  5. provide to portal team either out of band or maybe in search API according to Chuck M's spec - above
AlanSimmons commented 1 year ago

@shirey I'm not sure whether this is still a requested enhancement.

shirey commented 1 year ago

@computationdoc Is this still valid? Not sure where the spec for this is? If it is valid we need to move it to the UBKG repo as we're closing this repo.