Closed NickAkhmetov closed 5 months ago
Notes:
adata_to_multivec_zarr
function's output, especially given the open questions RE: genome assembly; if additional flexibility/test coverage are desired, I can implement them down the line, but this approach should help get this implementation out sooner.vitessce.data_utils
functions for the marker gene generation/dispersion normalization functionalities so this can be shared/deduplicated between mudata-to-ui
and anndata-to-ui
, and will make corresponding tickets in the appropriate task trackers.anndata
used in the various containers to at least 0.8.0 (ideally 0.9.2) to ensure that they're on the same version as the Azimuth pipeline/avoid any disk format mismatches - I made a JIRA ticket for this task (CAT-601).
Remaining todos: