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hubmapconsortium / portal-visualization

Given HuBMAP Dataset JSON, creates a Vitessce configuration
MIT License
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revise Vitessce view config for sn/scRNA-seq datasets #12

Open ngehlenborg opened 2 years ago

ngehlenborg commented 2 years ago

With Azimuth annotations available, the cell type annotations should be made more visible.

Suggested layout:

image (32)

The cell sets for the cell type should be listed first in the list, so that they show up in the top left corner.

ilan-gold commented 2 years ago

@ngehlenborg One thing that just occurred to me - lots of clusters are going to get a bit smushed in the violin plot going horizontally.

ngehlenborg commented 2 years ago

Yes, but it would be good to show it. Can we make it scrollable?

ilan-gold commented 2 years ago

I think my point was more that making it smaller than it currently is would be not great. The scrollable idea is good. I'll make an issue for it in Vitessce.

ngehlenborg commented 2 years ago

I think there is not enough space (in the current UI setup) to accommodate a view that is wide enough for all cell types no matter how wide we make it.

ngehlenborg commented 2 years ago

We will revisit once hubmapconsortium/portal-ui#2298 has been resolved.