When I last attempted a fresh Docker build, the Dockerfile at https://github.com/hubmapconsortium/sc-atac-seq-pipeline/blob/develop/docker/pipeline-code/Dockerfile failed to install all packages under R 3.6.3. It wasn't too difficult to rebuild the Docker image from R 4.0.2 (which was current when I made this attempt), but a late state of the pipeline failed under this version of R or whatever updated package version.
Make a working version of the pipeline based on the current version of R, and hopefully pin dependencies so the Docker image build will be more reproducible in the future.
When I last attempted a fresh Docker build, the Dockerfile at https://github.com/hubmapconsortium/sc-atac-seq-pipeline/blob/develop/docker/pipeline-code/Dockerfile failed to install all packages under R 3.6.3. It wasn't too difficult to rebuild the Docker image from R 4.0.2 (which was current when I made this attempt), but a late state of the pipeline failed under this version of R or whatever updated package version.
Make a working version of the pipeline based on the current version of R, and hopefully pin dependencies so the Docker image build will be more reproducible in the future.