hubmapconsortium / sc-atac-seq-pipeline

ATAC-seq pipelines for HuBMAP
MIT License
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Update `sc_atac_seq_prep_process_analyze.cwl` to provide expected outputs #45

Open mccalluc opened 2 years ago

mccalluc commented 2 years ago

It's producing archr_umap_coords_clusters.csv instead of umap_coords_clusters.csv, which is what scatac-csv-to-arrow.cwl expects.

If there's a good reason for the output here to remain the same, the downstream pipeline could change.

Longer thread in hide-developers slack.