There's quite a bit of minor clean-up that I think would make this repository easier to work on. Re-organizing CWL steps, renaming the top level workflow to standardize with other data types' pipelines (will require a tweak to multiome pipeline and ingest-pipeline DAG as well).
There's quite a bit of minor clean-up that I think would make this repository easier to work on. Re-organizing CWL steps, renaming the top level workflow to standardize with other data types' pipelines (will require a tweak to multiome pipeline and ingest-pipeline DAG as well).
As far as I can tell, this file isn't used for anything anymore: https://github.com/hubmapconsortium/sc-atac-seq-pipeline/blob/develop/sc_atac_seq_prep_process_analyze.json