Exploring datasets by cell types

[tsliaw]

Need: Exploring existent data to help identify key genomic, transcriptomic and/or proteomic differences between different movement-related disorders along with potential biomarkers that may aide in early diagnosis and/or targeted drug development.

User Scenario:

1. Navigates to portal and search by collection
2. Search all columns for “IPSC” (induced pluripotent stem cells)
3. Browse description for results and select best collection related to their work
4. Exports list of desirable datasets to save
5. Would also like to search for datasets related to neural stem cells, so selects “Clear All Filters” and repeat search with “stem cell neu” and export that list
6. Given results are in single standardized export format, two exported files can be combined into a single cohort with datasets from LINCS and Metabolomics
7. Can use persistent_id to obtain actual data files or request access to them

Source: Evaluation of CFDE use cases relevant to HuBMAP

[tsliaw]

Source: User Feedback from Breakout Session 1 in 2022 Kickoff Meeting

User Need:

• Ability to converge single cell datasets to make a clear distinction between a cell type vs. a cell state