Open omarespejel opened 2 years ago
Hello! I have recently been involved with a medical image segmentation project myself and was going through the The Medical Segmentation Decathlon Dataset
as well.
I haven't yet had experience adding datasets to this repository yet but would love to get started. Should I take this issue?
If yes, I've got two questions -
datasets
.Hi! Sure, feel free to take this issue. You can self-assign the issue by commenting #self-assign
.
To answer your questions:
None
.Note that the images/masks in this dataset are in NIfTI format, which our Image
feature currently doesn't support, so I think it's best to yield the paths to the images/masks in the script and add a preprocessing section to the card where we explain how to load/process the images/masks with nibabel
(I can help with that).
Note that the images/masks in this dataset are in NIfTI format, which our
Image
feature currently doesn't support, so I think it's best to yield the paths to the images/masks in the script and add a preprocessing section to the card where we explain how to load/process the images/masks withnibabel
(I can help with that).
Gotcha, thanks. Will start working on the issue and let you know in case of any doubt.
This is great! There is a first model on the HUb that uses this dataset! https://huggingface.co/MONAI/example_spleen_segmentation
Adding a Dataset
(cc @osanseviero @abidlabs )
Instructions to add a new dataset can be found here.