huggingface / transformers

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

https://huggingface.co/transformers

Apache License 2.0

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Alphafold 2.0 #12768

Open elk-cloner opened 3 years ago

elk-cloner commented 3 years ago

🌟 New model addition

It would be so amazing to have Alphafold model in huggingface. 😍 I don't know if there is any plan to add these kind of models to huggingface repo.

Model description

Open source status

[x] the model implementation is available: (github)
[] the model weights are available: (github)
[x] who are the authors: (@deepmind)

LysandreJik commented 3 years ago

cc @Rocketknight1 :)

Rocketknight1 commented 3 years ago

cc @Narsil too, this is something we've been looking at internally!

guolinke commented 2 years ago

Any updates?

Narsil commented 2 years ago

We roughly looked into it, but alphafold requires quite a bit of data to work with (other known proteins configurations), and it seems just transposing the model would be not super relevant on its own.

Feel free to take a look on your own, I think it would be a great addition if we could make it work, but it seemed the overall alphafold thing would be quite the undertaking and require a lot of other dependencies, which is why we haven't started a proper integration.