Error "object 'cond' not found"

please help with this error

metadata sample_id title time cond time_cos time_sin 1 OM1A OM_1 1 OM 0.9659258 0.2588190 2 OM1B OM_2 1 OM 0.9659258 0.2588190 3 OM1C OM_3 1 OM 0.9659258 0.2588190 4 OM2A OM_1 3 OM 0.7071068 0.7071068 5 OM2B OM_2 3 OM 0.7071068 0.7071068 6 OM2C OM_3 3 OM 0.7071068 0.7071068 7 OM3A OM_1 7 OM -0.2588190 0.9659258 8 OM3B OM_2 7 OM -0.2588190 0.9659258

rhyLimma = foreach(condNow = unique(metadata$cond), .combine = rbind) %do% {

design = model.matrix(~ time_cos + time_sin, data = metadata[cond == condNow])
fit = lmFit(y[, metadata$cond == condNow], design)
fit = eBayes(fit, trend = TRUE)
rhyNow = data.table(topTable(fit, coef = 2:3, number = Inf), keep.rownames = TRUE)
setnames(rhyNow, 'rn', 'gene_id')
rhyNow[, cond := condNow]} Error in { : task 1 failed - "object 'cond' not found"

What's that error?

hugheylab / limorhyde

Error "object 'cond' not found" #10