hugheylab / limorhyde

https://limorhyde.hugheylab.org
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lintr found issues with code #7

Closed github-actions[bot] closed 2 years ago

github-actions[bot] commented 2 years ago
  1. vignettes/introduction.Rmd line 68: Variable and function name style should be camelCase. (https://github.com/hugheylab/limorhyde/blob/master/vignettes/introduction.Rmd#L68)
    rhyLimmaSummary[, adj.P.Val := p.adjust(P.Value, method = 'BH')]   
  2. vignettes/introduction.Rmd line 86: Variable and function name style should be camelCase. (https://github.com/hugheylab/limorhyde/blob/master/vignettes/introduction.Rmd#L86)
    drLimma[, adj.P.Val := p.adjust(P.Value, method = 'BH')]   
  3. vignettes/introduction.Rmd line 104: Variable and function name style should be camelCase. (https://github.com/hugheylab/limorhyde/blob/master/vignettes/introduction.Rmd#L104)
    deLimma[, adj.P.Val := p.adjust(P.Value, method = 'BH')]   
  4. vignettes/introduction.Rmd line 126: Variable and function name style should be camelCase. (https://github.com/hugheylab/limorhyde/blob/master/vignettes/introduction.Rmd#L126)
    df[, sample_id := colnames(y[geneIdsNow, ])]   

    To have lintr ignore any of these issues, add the appropriate lines of those shown below to lint_ignore.csv at the top-level of the repository:

    
    filename,line_number,message,line
    vignettes/introduction.Rmd,68,Variable and function name style should be camelCase.,"rhyLimmaSummary[, adj.P.Val := p.adjust(P.Value, method = 'BH')]"
    vignettes/introduction.Rmd,86,Variable and function name style should be camelCase.,"drLimma[, adj.P.Val := p.adjust(P.Value, method = 'BH')]"
    vignettes/introduction.Rmd,104,Variable and function name style should be camelCase.,"deLimma[, adj.P.Val := p.adjust(P.Value, method = 'BH')]"
    vignettes/introduction.Rmd,126,Variable and function name style should be camelCase.,"df[, sample_id := colnames(y[geneIdsNow, ])]"