Closed github-actions[bot] closed 2 years ago
diseaseId = disease_id = snp = allele_count = count = N = vid = NULL
lower = melt = pval = se = upper = allele_count = varName = n_het = n_hom =
n_total = n_wt = NULL
lmInput1[, allele_count := as.factor(allele_count)]
flag = icd = person_id = . = NULL
phecode = person_id = . = prev = w = NULL
person_id = phecode = disease_id = w = score = . = NULL
disease_id = diseaseId = r_score = . = person_id = score = NULL
rOut[, r_score := rstandard(rFit)]})
dx_status = NULL
cases[, dx_status := 1]
dxStatus[is.na(dx_status), dx_status := 0]
n_het = n_hom = n_wt = NULL
dCounts[, n_wt := sum(lmInput$allele_count == 0)]
dCounts[, n_het := sum(lmInput$allele_count == 1)]
dCounts[, n_hom := sum(lmInput$allele_count == 2)]