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diseaseId = disease_id = snp = allele_count = count = N = vid = NULL
ci_lower = melt = pval = se = ci_upper = allele_count = varName = n_het = n_hom =
n_total = n_wt = NULL
lmInput1[, allele_count := as.factor(allele_count)]
glmStat[, ci_lower := ci[varName, 1]]
glmStat[, ci_upper := ci[varName, 2]]}
flag = icd = person_id = . = NULL
phecode = person_id = . = prev = w = NULL
person_id = phecode = disease_id = w = score = . = NULL
disease_id = diseaseId = resid_score = . = person_id = score = NULL
disease_id = NULL
dx_status = NULL
cases[, dx_status := 'case']
dxStatus[is.na(dx_status), dx_status := 'control']
n_het = n_hom = n_wt = NULL
dCounts[, n_wt := sum(lmInput$allele_count == 0)]
dCounts[, n_het := sum(lmInput$allele_count == 1)]
dCounts[, n_hom := sum(lmInput$allele_count == 2)]
IcdCodes = icdPhecodeMap[flag == flag1 & !(icd %in% diseaseDxIcdMap[disease_id == marfanId]$icd)]$icd
person_id = rep(npopMarfan+1:npopAll, icdCounts),
tests/testthat/test_phers.R line 140: Trailing blank lines are superfluous. (https://github.com/hugheylab/phers/blob/main/tests/testthat/test_phers.R#L140)
ggplot(plotInput) +
tests/testthat/test_phers.R line 140: Trailing blank lines are superfluous. (https://github.com/hugheylab/phers/blob/main/tests/testthat/test_phers.R#L140)