Methylation-aware structural variant calling

huishenlab / biscuit

BISulfite-seq CUI Toolkit

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Open bounlu opened 1 year ago

bounlu commented 1 year ago

Hi,

Does structural variant calling suggested here also work for targeted methylseq data?

Also, do you know of any tool/pipeline for methylation-aware CNV and fusion calling from WGBS/targeted methylseq data?

jamorrison commented 1 year ago

Hi @bounlu,

Tagging @biobenkj. He should be able to better answer both of your questions.

Cheers, Jacob

bounlu commented 1 year ago

Hi @biobenkj. Any thoughts on this?