Closed davidlyon3 closed 1 year ago
Hi @davidlyon3, thanks for your interests.
To customize the labelings, you may need to edit the corresponding R script that was used to create the plot. Nextflow creates a separate work directory for each task, which are saved under work/
directory by default. And the results are soft-linked to the results/
folder by default. You can use the ls -la
command to show the actual working folder. For example, ls -la results/archr_clustering/jpeg/Clusters_heatmap.jpg
will show you the full actual path to it. If you navigate to the actual work folder, you will see a run.R
script, which was used to create the plot. You can edit that file and perform custom analysis from there.
Let me know if make any sense,
Very useful.
Thank you very much again.
Thank you for the nice pipeline. I am a beginning in single cell bio. but I manage to run this 10XGENOMICS workflow pipeline but realize after many hours that the pipeline does not appear to label the PBMC clusters automatically from what I can see.
Can you show me exactly (since I am a beginning you may need to spell this out) how to label the PBMC Cell Clusters.
Thank you in advance.