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human-pangenomics / hpgp-data

Data from the Human PanGenomics Project
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What should I cite? #11

Closed jbelyeu closed 2 years ago

jbelyeu commented 2 years ago

Sorry, one more question. I don't see direct guidance on a source to cite when using this data. Preferences?

skoren commented 2 years ago

For the ONT, I'd say cite the Shasta paper: https://www.nature.com/articles/s41587-020-0503-6. The HiFi data is part of the HPRC (https://github.com/human-pangenomics/HPP_Year1_Data_Freeze_v1.0) so follow their guidance. The Illumina came from NY Genome center: https://www.internationalgenome.org/data-portal/data-collection/30x-grch38. The CLR, 10X, and parental Illumina are from NIH and there isn't a citation outside of this GitHub.

jbelyeu commented 2 years ago

Ah, makes sense, thanks