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humanlongevity / HLA

xHLA: Fast and accurate HLA typing from short read sequence data
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run errors #25

Open cjieming opened 6 years ago

cjieming commented 6 years ago

Hi I am running xHLA on the 1000 Genome Project exome samples. I was able to run for most of them except for some of the samples, which churned out some run errors that could be lumped into 2 kinds: Type 1: Warning message: In mclapply(solution, function(s) { : all scheduled cores encountered errors in user code Error in more$solution : $ operator is invalid for atomic vectors Calls: unique Execution halted

Type 2: Error in apply(mat2[, solution], 1, max) : dim(X) must have a positive length Execution halted

How do I troubleshoot and rectify them? Thank you!

MRamirezGarras commented 6 years ago

I have just tried xHLA and had the exact same Type 2 error. Anybody has a solution for it?

Thank you!

abhisheknrl commented 5 years ago

I just encountered the same errors. Any solution yet?

Thanks!

yubau1112 commented 5 years ago

I just encountered the same errors, too. Any solution yet?

Thanks!

Gerosyclouds commented 4 years ago

I just encountered the same errors, too. Any solution yet?

Thanks!

sgsx11 commented 11 months ago

I just encountered the same errors. Any solution yet?

Thanks!