how to tun it in singularity environment?

humanlongevity / HLA

xHLA: Fast and accurate HLA typing from short read sequence data

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how to tun it in singularity environment? #44

Closed xhy1219 closed 4 years ago

pdeven commented 2 years ago

docker pull humanlongevity/hla:latest
sudo singularity build hla.sif docker-daemon://humanlongevity/hla::latest
singularity exec hla.sif /opt/bin/typer.sh test-HLA.bam test