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humanlongevity / HLA

xHLA: Fast and accurate HLA typing from short read sequence data
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Can I run xHLA without docker? #45

Open Tiredbird opened 5 years ago

Tiredbird commented 5 years ago

Hello all, I have no root access and I could not use docker. Could I use this software without docker ? How did I install it?

Thank you!

zhoulin8908 commented 5 years ago

I want to know, too!!!

polojacky commented 4 years ago

Run.py under bin directory is the entry of the program. You can try running this file if you have installed all the dependencies such as diamond and some python and R packages. But I really don't recommend.

koujiaodahan commented 4 years ago

I want to know, too!!!

koujiaodahan commented 4 years ago

I suppose we can install all dependencies follwing the dockerfile

t-carroll commented 4 years ago

I also have this issue- would be great if there could be a conda option as an alternative, or some other prescribed way to install required dependencies.

koujiaodahan commented 4 years ago

I did it following the dockerfile. In fact ,I dont run with any AWS S3 inputs or outputs,so the boto3 package is not necessary and the corresponding code in run.py could be commented

t-carroll commented 4 years ago

I did it following the dockerfile. In fact ,I dont run with any AWS S3 inputs or outputs,so the boto3 package is not necessary and the corresponding code in run.py could be commented

thanks for that info, will give it a shot!

chrissyhroberts commented 2 years ago

My fork runs through R and Python. https://github.com/chrissyhroberts/xHLA_R