Option --full doesn't work correctly

humanlongevity / HLA

xHLA: Fast and accurate HLA typing from short read sequence data

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Option --full doesn't work correctly #56

Open PKazakova opened 4 years ago

PKazakova commented 4 years ago

Hello, @tanghaibao!

I run run.py with option --full and without this option and I got absolutely identical results: only 4-digits (as default). Can option --full work correctly? Can you help with this problem?

Kind regards, Polina

serge2016 commented 3 years ago

Hi. Any news?

VErconi commented 2 years ago

Hi,

Just following up on this issue. I'm experiencing the same problem of Polina and Serge.

Please, send help :) Veronica

Stikus commented 7 months ago

As we can see in code:

if [ "$FULL" = true ]; then
    $BIN/full.r $OUT/${ID}.tsv.dna $OUT/${ID}.hla $OUT/${ID}.hla.full
fi

running with --full only run one extra script full.r and not modify base output. You can try to use this extra .hla.full output file.