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humanlongevity / HLA

xHLA: Fast and accurate HLA typing from short read sequence data
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Update Stored HLA Database #8

Open DarioS opened 6 years ago

DarioS commented 6 years ago

The multiple sequence alignments in the data folder are almost 2 years old. Since then, many new alleles have been discovered and recorded in IMGT/HLA and existing alleles have been renamed or improved. The alleles contained in xHLA should be updated to release 3.29.0.

tanghaibao commented 6 years ago

@DarioS thanks for the bringing this up. I'll look into this.

cjieming commented 6 years ago

Hi @tanghaibao, I see some scripts in the data folder. Wondering if there is a way to update the IMGT/HLA ourselves? Thanks!

NTNguyen13 commented 4 years ago

Hi @tanghaibao , the xHLA run great, however I also want to check if the updated database from IMGT can lead to different typing result. Could you please help showing me how to update the database of xHLA? Thank you very much

serge2016 commented 4 years ago

Same question here! Could you provide, please, an instruction for updating the HLA database in the xHLA using the latest one from https://www.ebi.ac.uk/ipd/imgt/hla/ ?

golubnikova commented 3 years ago

Have the same question! Looking forward to your answer.

mainguyenanhvu commented 2 years ago

@tanghaibao Thank you for your code. Could you please show me the way to update HLA db in xHLA by using the latest one from https://www.ebi.ac.uk/ipd/imgt/hla/? Thank you.