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hurlbertlab / core-transient

Data and code for NSF funded research on core vs transient species
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summary and analysis script #76

Closed ssnell6 closed 8 years ago

ssnell6 commented 8 years ago

I think I have figured out the error when running the summary and analysis script - the script stalls on samples without propOcc tables, aka any row with a format flag other than 1. How was this issue avoided when the script was run before? The original summary table seems to have skipped over the incomplete datasets, but I don't see commands to do that anywhere in the code I have.

ssnell6 commented 8 years ago

fixed with code: datasetIDs = dataformattingtable$dataset_ID[dataformattingtable$format_flag == 1]