FDR correction for the p-values in CFRM identification step

husensofteng / pancancer_analysis

Scripts used to analyse the PCAWG datasets

MIT License

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FDR correction for the p-values in CFRM identification step #2

Open husensofteng opened 4 years ago

husensofteng commented 4 years ago

Correct the p-values (FDR) calculated based on CFRM scores

link in the code: https://github.com/husensofteng/pancancer_analysis/blob/c46e6580034a0a487c936cb3b236c5632d28f537/Utilities.py#L625

karsmo commented 4 years ago

Solved fdr correction of p-values per TF Added testing files: ProcessCohorts_26Feb.py and Utilities:26Feb.py filter_on_qval=True, sig_thresh_fdr=0.2 parameters added to a get_muts_sig_per_TF function