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husonlab / megan-ce

MEGAN Community Edition
GNU General Public License v3.0
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uniref GI mapping file #1

Open smeagol7 opened 8 years ago

smeagol7 commented 8 years ago

Hi,

I used uniref90 with Diamond to analyse metagenomic reads, with xml as output. When I load the file in Megan, all reads are marked as unassigned, even though I tick the parse taxon names in the taxonomy tab. I read that megan needs a GI mapping file but how to create it for uniref90? Best Olivier

Chaldron commented 5 years ago

Has anyone else solved this yet? I've also run a DIAMOND analysis on some metagenomic reads using the Uniref90 reference database, but am unable to view any assigned reads in MEGAN (which I assume is due to lack of a proper mapping file). Is there a way to generate our own mapping files for MEGAN to use?

Thanks!