Open ialbert opened 7 years ago
When using MEGAN 6 we were unsuccessful in importing data in the "RDP Standalone" classification format.
Notably this same file in RDP Standalone format loads correctly in MEGAN 5.
Looking at the code below:
https://github.com/danielhuson/megan-ce/blob/master/src/megan/parsers/blast/RDPStandalone2SAMIterator.java
It does not appear that it attempts to do the right thing. As the MEGAN 6 manual states the RDP Standalone format is:
read-name [-] [taxon-name rank-name disjointScore] [taxon-name rank-name disjointScore]
whereas the code above attempts to split by ; among other things.
;
When using MEGAN 6 we were unsuccessful in importing data in the "RDP Standalone" classification format.
Notably this same file in RDP Standalone format loads correctly in MEGAN 5.
Looking at the code below:
https://github.com/danielhuson/megan-ce/blob/master/src/megan/parsers/blast/RDPStandalone2SAMIterator.java
It does not appear that it attempts to do the right thing. As the MEGAN 6 manual states the RDP Standalone format is:
whereas the code above attempts to split by
;among other things.