husonlab
commented
1 month ago I just loaded your alignment into SplitsTree. The sequence starting on line 3436 has a different length than the previous ones. If you give SplitsTree a FastA file as input then it will assume that all sequences are the same length...
On Jun 13, 2024, at 18:25, Stephanie Rodrigues @.***> wrote:
Hi All, I am trying to run splitsTree for a gene. I have my alignment but once I tried to open I got this message: Failed:Line 1725: expected 1720 taxon names, found: 1723 Open file failed: jloda.util.IOExceptionWithLineNumber: Line 1725: expected 1720 taxon names, found: 1723.
I checked my entire alignment, there is no extra taxon name. I removed any weird character from the file that could potentially cause that but I still find this error. As git does not allow me to upload a nexus, I am attaching a text file with my sequences. hlgC_1720.txt https://github.com/user-attachments/files/15825364/hlgC_1720.txt Thanks!
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StephanieRodrigues
Hi All, I am trying to run splitsTree for a gene. I have my alignment but once I tried to open I got this message: Failed:Line 1725: expected 1720 taxon names, found: 1723 Open file failed: jloda.util.IOExceptionWithLineNumber: Line 1725: expected 1720 taxon names, found: 1723.
I checked my entire alignment, there is no extra taxon name. I removed any weird character from the file that could potentially cause that but I still find this error. As git does not allow me to upload a nexus, I am attaching a text file with my sequences. hlgC_1720.txt
Thanks!