Exporting tanglegram order

[hyanwong]

Is it possible to programmatically export order of taxa on the left and right of a tanglegram. I assumed that "Export -> Taxon Display Labels..." would do it, but the ~legalese~labels seem not to be exported in the same order shown in the plotted tanglegram?

Previously I used the "dendroscope" java program and specified the following simple CLI commands:

open file='newick_in.nwk';
compute tanglegram method=nnet
save format=newick file='newick_out.nwk'
quit;

[husonlab]

In SplitsTree, the reordering of the taxa for a tanglegram is computed in the Tanglegram View block. I have put this on my list of features to implement in the near future.