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hust220 / nsp

Nucleic acids Structure Prediction
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nsp-lib #5

Open kad-ecoli opened 2 years ago

kad-ecoli commented 2 years ago

Is the NSP library still downloadable? I have an old copy of the library, but there is no "/RNA/pars/cg/CG2AA/templates2.pdb" within the library, causing nsp optimize to fail.

swapnilbaral-git commented 2 years ago

I am new user and have been using 3drna webserver which I use to obtain 3D structure of DNA/RNA given the sequence and dot bracket notation. I learned about the nsp source code and have been working on compiling it. I think I have done the first part and now I am also looking for the library template. Did you find the way to download it or if not, can you send me the old template such that I can check if my installation has been running properly. Also, is there a documentation about how I enter syntax to obtain 3D structure from sequence and dot bracket notation?

CuiChangIsLaJi commented 2 years ago

I also encountered the same problem of failing to download the library package in new version. The "wget" command in the documentation has encountered a "404 not found" error probably because the webpage has been updated and redirected(from http://biophy.hust.edu.cn/ to http://biophy.hust.edu.cn/new/). Is there anyone who owns either a new or an old version of library? Please send a copy to me so I can continue my graduation project (crying QAQ)