Refactor local utilities and CLI interface

[hv0905]

• Rebuild local indexing to align its behaviour with upload API.
• Rewrite CLI interface using Typer to have a more clear logic and provide more features.

[codecov[bot]]

Codecov Report

Attention: Patch coverage is 91.22807% with 5 lines in your changes missing coverage. Please review.

Project coverage is 83.83%. Comparing base (d01e75e) to head (ae00f0f).

Files	Patch %	Lines
app/Services/storage/local_storage.py	71.42%	2 Missing :warning:
app/Services/index_service.py	50.00%	1 Missing :warning:
app/Services/storage/s3_compatible_storage.py	50.00%	1 Missing :warning:
app/Services/upload_service.py	92.85%	1 Missing :warning:

Additional details and impacted files

```diff @@ Coverage Diff @@ ## master #41 +/- ## ========================================== + Coverage 83.50% 83.83% +0.33% ========================================== Files 31 34 +3 Lines 1291 1324 +33 ========================================== + Hits 1078 1110 +32 - Misses 213 214 +1 ```

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[codeclimate[bot]]

Code Climate has analyzed commit ae00f0f0 and detected 0 issues on this pull request.

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