sample error with pymc version 5.17.0

[CUMT530849827]

Dear developers, thank you very much for providing such excellent software. I found that I could not solve this error when I processed column 3, but I handled it normally on another computer without any error. My current beat version is 2.0.1, how should I deal with this error？

(/opt/beat) root@ubuntu:~/Desktop# beat sample Laquila WARNING (pytensor.tensor.blas): Using NumPy C-API based implementation for BLAS functions. To enable 'bem' mode packages 'pygmsh' and 'cutde' need to be installed. config - INFO All hierarchicals ok! config - INFO All hyperparameters ok! config - INFO All priors ok! models - INFO ... Initialising Geometry Optimizer ...

models - INFO Analysing problem ... models - INFO ---------------------

models - INFO Using RectangularSource for 1 sources for event --- !pf.Event lat: 42.29 lon: 13.35 time: '2009-04-06 01:32:49.190000057' depth: 12000.0 name: '200904060132A' magnitude: 6.343080192483292 region: 'CENTRAL ITALY' catalog: 'gCMT' moment_tensor: !pf.MomentTensor mnn: 1.43e+18 mee: 1.87e+18 mdd: -3.3e+18 mne: 1.77e+18 mnd: -1.43e+18 med: 2.6900000000000003e+17 strike1: 120.23408298515041 dip1: 54.240869089580485 rake1: -112.81739742081386 strike2: 335.98575923255856 dip2: 41.58440373860804 rake2: -61.69749587601104 moment: 3.6696131948749036e+18 magnitude: 6.343080192483292 duration: 7.0

geodetic - INFO Number of geodetic datasets: 2 geodetic - INFO Initialising corrections ... heart - INFO Setting up Ramps correction for Laquila_dscxn heart - INFO Masking data for Ramps estimation! heart - INFO Not correcting Laquila_dscxn for Euler Pole heart - INFO Not correcting Laquila_dscxn for Strain Rate heart - INFO Setting up Ramps correction for Laquila_ascxn heart - INFO Masking data for Ramps estimation! heart - INFO Not correcting Laquila_ascxn for Euler Pole heart - INFO Not correcting Laquila_ascxn for Strain Rate geodetic - INFO Number of geodetic data points: 419 geodetic - INFO Initialising geometry geodetic composite ... models - INFO ... Building model ...

/opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( models - INFO Initialised hyperparameter h_SAR with size 2 models - INFO Initialized 2 hyperparameters in total! geodetic - INFO Evaluating config for Ramps corrections for datasets... /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( geodetic - INFO Evaluating config for Euler Pole corrections for datasets... geodetic - INFO No Euler Pole correction! geodetic - INFO Evaluating config for Strain Rate corrections for datasets... geodetic - INFO No Strain Rate correction! geodetic - INFO Initialized 6 hierarchical parameters. geodetic - INFO Geodetic optimization on: depth, dip, east_shift, length, north_shift, rake, slip, strike, width geodetic - INFO Retrieving geodetic data-covariances with structure "import" for Laquila_dscxn ... geodetic - INFO Retrieving geodetic data-covariances with structure "import" for Laquila_ascxn ... geodetic - INFO Applying corrections! ... models - INFO Model building was successful!

models - INFO Using "bin" backend to store samples! models - INFO ... Initiate Sequential Monte Carlo ... n_chains=1000, tune_interval=10, n_jobs=4, proposal_distribution: MultivariateCauchy,

metropolis - INFO Creating initial population for 1000 chains ... Sampling: [Laquila_ascxn_azimuth_ramp, Laquila_ascxn_offset, Laquila_ascxn_range_ramp, Laquila_dscxn_azimuth_ramp, Laquila_dscxn_offset, Laquila_dscxn_range_ramp, depth, dip, east_shift, h_SAR, length, north_shift, nucleation_x, nucleation_y, rake, slip, strike, time, width] pymc.sampling.forward - INFO Sampling: [Laquila_ascxn_azimuth_ramp, Laquila_ascxn_offset, Laquila_ascxn_range_ramp, Laquila_dscxn_azimuth_ramp, Laquila_dscxn_offset, Laquila_dscxn_range_ramp, depth, dip, east_shift, h_SAR, length, north_shift, nucleation_x, nucleationy, rake, slip, strike, time, width] metropolis - INFO Compiling model graph ... Traceback (most recent call last): File "/opt/beat/bin/beat", line 8, in sys.exit(main()) ^^^^^^ File "/opt/beat/lib/python3.11/site-packages/beat/apps/beat.py", line 2442, in main globals()["command" + command](args) File "/opt/beat/lib/python3.11/site-packages/beat/apps/beat.py", line 1064, in command_sample step = problem.init_sampler(hypers=options.hypers) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/opt/beat/lib/python3.11/site-packages/beat/models/problems.py", line 175, in init_sampler step = sampler.SMC( ^^^^^^^^^^^^ File "/opt/beat/lib/python3.11/site-packages/beat/sampler/smc.py", line 96, in init super(SMC, self).init( File "/opt/beat/lib/python3.11/site-packages/beat/sampler/metropolis.py", line 125, in init self.compile_model_graph(model) File "/opt/beat/lib/python3.11/site-packages/beat/sampler/metropolis.py", line 178, in compile_model_graph out_vars=[model.varlogp], ^^^^^^^^^^^^^ File "/opt/beat/lib/python3.11/site-packages/pymc/model/core.py", line 862, in varlogp return self.logp(vars=self.free_RVs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/opt/beat/lib/python3.11/site-packages/pymc/model/core.py", line 746, in logp rv_logps = transformed_conditional_logp( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/opt/beat/lib/python3.11/site-packages/pymc/logprob/basic.py", line 598, in transformed_conditional_logp temp_logp_terms = conditional_logp( ^^^^^^^^^^^^^^^^^ File "/opt/beat/lib/python3.11/site-packages/pymc/logprob/basic.py", line 481, in conditional_logp fgraph = construct_ir_fgraph(rv_values, ir_rewriter=ir_rewriter) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/opt/beat/lib/python3.11/site-packages/pymc/logprob/rewriting.py", line 243, in construct_ir_fgraph replacements = tuple((rv, valued_rv(rv, value)) for rv, value in ir_rv_values.items()) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/opt/beat/lib/python3.11/site-packages/pymc/logprob/rewriting.py", line 243, in replacements = tuple((rv, valued_rv(rv, value)) for rv, value in ir_rv_values.items()) ^^^^^^^^^^^^^^^^^^^^ File "/opt/beat/lib/python3.11/site-packages/pytensor/graph/op.py", line 304, in call compute_test_value(node) File "/opt/beat/lib/python3.11/site-packages/pytensor/graph/op.py", line 125, in compute_test_value thunk() File "/opt/beat/lib/python3.11/site-packages/pytensor/graph/op.py", line 524, in rval r = p(n, [x[0] for x in i], o) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/opt/beat/lib/python3.11/site-packages/pymc/logprob/abstract.py", line 239, in perform raise NotImplementedError("ValuedVar should not be present in the final graph!") NotImplementedError: ValuedVar should not be present in the final graph! (/opt/beat) root@ubuntu:~/Desktop#

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BEAT_log.txt

[hvasbath]

Hi, I am happy you like the software! Please update to the latest version 2.0.3 that error was resolved with that update. Thank you!

[CUMT530849827]

Thanks for your reply, I updated beat to version 2.0.3 but it still reports the same error，I uploaded my data and yaml file and don't know where the error was

Laquila.zip

[hvasbath]

Whats your pymc version?

[CUMT530849827]

5.17.0

[hvasbath]

Please try installing an earlier version 5.16.2? There were major changes in pymc with 5.17.0 (just released this week) maybe that broke things?

[CUMT530849827]

It's starting to work properly Thank you very much for your guidance

[hvasbath]

Great thanks for reporting! Will need to pin the version of pymc then in the next release.

[CUMT530849827]

I used beat to complete the data processing of column 3 and got the same result as the case. However, I used my own data and the following error occurred. I only had insar data, so I made a new yaml file，How should I deal with this error

(/opt/beat) root@ubuntu:~/Desktop# beat sample mydz WARNING (pytensor.tensor.blas): Using NumPy C-API based implementation for BLAS functions. To enable 'bem' mode packages 'pygmsh' and 'cutde' need to be installed. config - INFO All hierarchicals ok! config - INFO All hyperparameters ok! config - INFO All priors ok! models - INFO ... Initialising Geometry Optimizer ...

models - INFO Analysing problem ... models - INFO ---------------------

models - INFO Using RectangularSource for 1 sources for event --- !pf.Event lat: 37.81 lon: 101.31 time: '2022-01-07 17:45:32.089999914' depth: 13700.0 name: '202201071745A' magnitude: 6.686712302029662 region: 'QINGHAI, CHINA' catalog: 'gCMT' moment_tensor: !pf.MomentTensor mnn: 5.659999999999999e+18 mee: -5.88e+18 mdd: 2.1e+17 mne: -1.04e+19 mnd: 5.6e+17 med: -1.67e+18 strike1: 104.56241311967706 dip1: 81.57891681425234 rake1: 0.7926346174953631 strike2: 14.446326877538597 dip2: 89.21591169980759 rake2: 171.57812248597253 moment: 1.2024539492221729e+19 magnitude: 6.686712302029662 duration: 10.4

geodetic - INFO Number of geodetic datasets: 1 geodetic - INFO Initialising corrections ... heart - INFO Setting up Ramps correction for myas_asc heart - INFO Masking data for Ramps estimation! heart - INFO Not correcting myas_asc for Euler Pole heart - INFO Not correcting myas_asc for Strain Rate geodetic - INFO Number of geodetic data points: 370 geodetic - INFO Initialising geometry geodetic composite ... models - INFO ... Building model ...

config - INFO not solving for opening_fraction, got fixed at 0.0 /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( models - INFO Initialised hyperparameter h_SAR with size 1 models - INFO Initialized 1 hyperparameters in total! geodetic - INFO Evaluating config for Ramps corrections for datasets... /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( /opt/beat/lib/python3.11/site-packages/pymc/model/core.py:1453: UserWarning: To disable default transform, please use default_transform=None instead of transform=None. Setting transform to None will not have any effect in future. warnings.warn( geodetic - INFO Evaluating config for Euler Pole corrections for datasets... geodetic - INFO No Euler Pole correction! geodetic - INFO Evaluating config for Strain Rate corrections for datasets... geodetic - INFO No Strain Rate correction! geodetic - INFO Initialized 3 hierarchical parameters. geodetic - INFO Geodetic optimization on: depth, dip, east_shift, length, northshift, rake, slip, strike, width Traceback (most recent call last): File "/opt/beat/bin/beat", line 8, in sys.exit(main()) ^^^^^^ File "/opt/beat/lib/python3.11/site-packages/beat/apps/beat.py", line 2442, in main globals()["command" + command](args) File "/opt/beat/lib/python3.11/site-packages/beat/apps/beat.py", line 1062, in command_sample problem = load_model(project_dir, options.mode, options.hypers) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/opt/beat/lib/python3.11/site-packages/beat/models/problems.py", line 922, in load_model problem.built_model() File "/opt/beat/lib/python3.11/site-packages/beat/models/problems.py", line 241, in built_model total_llk += composite.get_formula( ^^^^^^^^^^^^^^^^^^^^^^ File "/opt/beat/lib/python3.11/site-packages/beat/models/geodetic.py", line 635, in get_formula disp = self.get_synths(self.input_rvs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/opt/beat/lib/python3.11/site-packages/pytensor/graph/op.py", line 304, in call compute_test_value(node) File "/opt/beat/lib/python3.11/site-packages/pytensor/graph/op.py", line 125, in compute_test_value thunk() File "/opt/beat/lib/python3.11/site-packages/pytensor/graph/op.py", line 524, in rval r = p(n, [x[0] for x in i], o) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/opt/beat/lib/python3.11/site-packages/beat/pytensorf.py", line 118, in perform synths[0] = heart.geo_synthetics( ^^^^^^^^^^^^^^^^^^^^^ File "/opt/beat/lib/python3.11/site-packages/beat/heart.py", line 4197, in geo_synthetics response = engine.process(sources, targets) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/opt/beat/lib/python3.11/site-packages/pyrocko/gf/seismosizer.py", line 5744, in process for ii_results, tcounters_static in process_static( File "/opt/beat/lib/python3.11/site-packages/pyrocko/gf/seismosizer.py", line 5247, in process_static base_statics, tcounters = engine.base_statics( ^^^^^^^^^^^^^^^^^^^^ File "/opt/beat/lib/python3.11/site-packages/pyrocko/gf/seismosizer.py", line 5585, in base_statics basestatics = store.statics( ^^^^^^^^^^^^^^^ File "/opt/beat/lib/python3.11/site-packages/pyrocko/gf/store.py", line 2084, in statics res = store_ext.store_calc_static( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ pyrocko.gf.store_ext.StoreExtError: INDEX_OUT_OF_BOUNDS yamlfile.txt

[hvasbath]

Please see the FAQ, yours is point 5: https://pyrocko.org/beat/docs/current/faq.html

[CUMT530849827]

Thank you, Professor. I have completed List 3 and List 4 according to the instructions and the issue on github. beat is very attractive to me and I think it is a great software. I want to know more about it