Installation instructions

Thanks for releasing this work @hwarden162 - I'm wondering if you can provide installation instructions in the README?
I currently tried installing with poetry install and received the following error:
(cellgen) (base) waygr@CHAI-M-C02G83P cellgenerator % poetry install
The currently activated Python version 3.10.10 is not supported by the project (^3.13).
Trying to find and use a compatible version.
Using python3 (3.13.0)
Installing dependencies from lock file

Package operations: 1 install, 0 updates, 0 removals

  • Installing scipy (1.14.1): Failed

  ChefBuildError

  Backend subprocess exited when trying to invoke build_wheel

  + meson setup /private/var/folders/02/q30k_4wn2dqbz5pj_vvc8xn40000gp/T/tmpokab0f9r/scipy-1.14.1 /private/var/folders/02/q30k_4wn2dqbz5pj_vvc8xn40000gp/T/tmpokab0f9r/scipy-1.14.1/.mesonpy-zgxoejlu -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --native-file=/private/var/folders/02/q30k_4wn2dqbz5pj_vvc8xn40000gp/T/tmpokab0f9r/scipy-1.14.1/.mesonpy-zgxoejlu/meson-python-native-file.ini
  The Meson build system
  Version: 1.6.0
  Source dir: /private/var/folders/02/q30k_4wn2dqbz5pj_vvc8xn40000gp/T/tmpokab0f9r/scipy-1.14.1
  Build dir: /private/var/folders/02/q30k_4wn2dqbz5pj_vvc8xn40000gp/T/tmpokab0f9r/scipy-1.14.1/.mesonpy-zgxoejlu
  Build type: native build
  Project name: scipy
  Project version: 1.14.1
  C compiler for the host machine: arm64-apple-darwin20.0.0-clang (clang 16.0.6 "clang version 16.0.6")
  C linker for the host machine: arm64-apple-darwin20.0.0-clang ld64 609
  C++ compiler for the host machine: arm64-apple-darwin20.0.0-clang++ (clang 16.0.6 "clang version 16.0.6")
  C++ linker for the host machine: arm64-apple-darwin20.0.0-clang++ ld64 609
  Cython compiler for the host machine: cython (cython 3.0.11)
  Host machine cpu family: aarch64
  Host machine cpu: aarch64
  Program python found: YES (/private/var/folders/02/q30k_4wn2dqbz5pj_vvc8xn40000gp/T/tmpir34vr5_/.venv/bin/python)
  Found pkg-config: YES (/opt/homebrew/bin/pkg-config) 0.29.2
  Run-time dependency python found: YES 3.13
  Program cython found: YES (/var/folders/02/q30k_4wn2dqbz5pj_vvc8xn40000gp/T/tmpir34vr5_/.venv/bin/cython)
  Compiler for C supports arguments -Wno-unused-but-set-variable: YES
  Compiler for C supports arguments -Wno-unused-function: YES
  Compiler for C supports arguments -Wno-conversion: YES
  Compiler for C supports arguments -Wno-misleading-indentation: YES
  Library m found: YES
  Fortran compiler for the host machine: /Users/waygr/miniforge3/bin/arm64-apple-darwin20.0.0-gfortran (gcc 12.2.0 "GNU Fortran (GCC) 12.2.0")
  Fortran linker for the host machine: /Users/waygr/miniforge3/bin/arm64-apple-darwin20.0.0-gfortran ld64 609
  Compiler for Fortran supports arguments -Wno-conversion: YES
  Compiler for C supports link arguments -Wl,-ld_classic: NO
  Compiler for C supports link arguments -Wl,-dead_strip: YES
  Checking if "-Wl,--version-script" : links: NO
  Program tools/generate_f2pymod.py found: YES (/private/var/folders/02/q30k_4wn2dqbz5pj_vvc8xn40000gp/T/tmpir34vr5_/.venv/bin/python /private/var/folders/02/q30k_4wn2dqbz5pj_vvc8xn40000gp/T/tmpokab0f9r/scipy-1.14.1/tools/generate_f2pymod.py)
  Program scipy/_build_utils/tempita.py found: YES (/private/var/folders/02/q30k_4wn2dqbz5pj_vvc8xn40000gp/T/tmpir34vr5_/.venv/bin/python /private/var/folders/02/q30k_4wn2dqbz5pj_vvc8xn40000gp/T/tmpokab0f9r/scipy-1.14.1/scipy/_build_utils/tempita.py)
  Program pythran found: YES 0.16.1 0.16.1 (/var/folders/02/q30k_4wn2dqbz5pj_vvc8xn40000gp/T/tmpir34vr5_/.venv/bin/pythran)
  Found CMake: /opt/homebrew/bin/cmake (3.30.5)
  WARNING: CMake Toolchain: Failed to determine CMake compilers state
  Run-time dependency xsimd found: NO (tried pkgconfig, framework and cmake)
  Run-time dependency threads found: YES
  Library npymath found: YES
  pybind11-config found: YES (/var/folders/02/q30k_4wn2dqbz5pj_vvc8xn40000gp/T/tmpir34vr5_/.venv/bin/pybind11-config) 2.12.1
  Run-time dependency pybind11 found: YES 2.12.1
  Program f2py found: YES (/var/folders/02/q30k_4wn2dqbz5pj_vvc8xn40000gp/T/tmpir34vr5_/.venv/bin/f2py)
  Run-time dependency scipy-openblas found: NO (tried pkgconfig)
  Run-time dependency openblas found: NO (tried pkgconfig, framework and cmake)
  Run-time dependency openblas found: NO (tried pkgconfig, framework and cmake)

  ../scipy/meson.build:216:9: ERROR: Dependency "OpenBLAS" not found, tried pkgconfig, framework and cmake

  A full log can be found at /private/var/folders/02/q30k_4wn2dqbz5pj_vvc8xn40000gp/T/tmpokab0f9r/scipy-1.14.1/.mesonpy-zgxoejlu/meson-logs/meson-log.txt

  at ~/miniforge3/lib/python3.10/site-packages/poetry/installation/chef.py:147 in _prepare
      143│
      144│                 error = ChefBuildError("\n\n".join(message_parts))
      145│
      146│             if error is not None:
    → 147│                 raise error from None
      148│
      149│             return path
      150│
      151│     def _prepare_sdist(self, archive: Path, destination: Path | None = None) -> Path:

Note: This error originates from the build backend, and is likely not a problem with poetry but with scipy (1.14.1) not supporting PEP 517 builds. You can verify this by running 'pip wheel --use-pep517 "scipy (==1.14.1)"'.
hwarden162 / cellgenerator

Installation instructions #1
