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hxj5 / scCNASim

Simulation of somatic copy number alterations in single cells
Apache License 2.0
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TypeError: slice indices must be integers or None or have an __index__ method (cumi.py) #2

Open hxj5 opened 3 weeks ago

hxj5 commented 3 weeks ago

With Python 3.7:

multiprocessing.pool.RemoteTraceback: 
"""
Traceback (most recent call last):
  File "/home/rthuang/anaconda3/envs/XCL-PRE/lib/python3.7/multiprocessing/pool.py", line 121, in worker
    result = (True, func(*args, **kwds))
  File "/home/rthuang/anaconda3/envs/XCL-PRE/lib/python3.7/site-packages/sccnvsim/rs/cumi.py", line 164, in gen_umis_thread
    dat[c][k][i].append(x[r:(r+X[i, j])])
TypeError: slice indices must be integers or None or have an __index__ method
"""
hxj5 commented 3 weeks ago

Everything works well with Python 3.11 (3.11.9). We have listed the requirement/dependency of Python version (i.e., Python>=3.11) in the setup.py and relevant docs.

hxj5 commented 3 weeks ago

The same issue when using Python 3.9 (3.9.19). Not sure which dependency (e.g., numpy, pandas, anndata) is not compatible with the codes.