More documentation

[hyanwong]

Start actually making the documentation. Currently some failed references which need tracking down

Summary by CodeRabbit

• New Features
  • Introduced a class method for tree sequence conversion within the Graph class for enhanced usability.
• Refactor
  • Improved clarity and consistency in the Graph class through updates to docstrings, comments, and method names.
  • Refined the structure and naming in the GeneticInheritanceGraphLibrary for better readability and maintenance.
• Documentation
  • Updated documentation to reflect recent changes and provide clearer guidance for users.
• Tests
  • Adjusted test cases to align with the latest code changes, ensuring reliability.

[coderabbitai[bot]]

Walkthrough

The GeneticInheritanceGraphLibrary has undergone a significant update focusing on structural and clarity enhancements. Key modifications include the integration of from_tree_sequence as a class method in the Graph class, refinement of constants within the constants.py, and methodological adjustments in the tables.py for better clarity. Documentation and tests have been updated to reflect these changes, ensuring users and developers alike can adapt smoothly to the new library structure.

Changes

Files	Change Summaries
.../__init__.py, .../graph.py	- Moved from_tree_sequence to Graph as a class method - Imported ValidFlags - Updated docstrings and method names
.../constants.py	- Refactored Const and ValidFlags - Removed IntFlag inheritance - Redefined ValidFlags with comments
.../tables.py	- Renamed RowClass to _RowClass - Adjusted method signatures and documentation for validation flags
docs/... (multiple files)	- Updated documentation content
tests/... (multiple test files)	- Updated test cases to align with class and method changes

🐇✨
Changes abound, the code does hop,
From tree to graph, it does not stop.
Constants refined, with clarity bright,
Documentation shines, in the moonlight.
Tests all pass, with joyful leaps,
In the code burrow, improvement sleeps.
🌟🐾

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