Closed hyanwong closed 4 months ago
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Files that changed from the base of the PR and between 88bdc1884b5cce2103db0f51f3cf49ca0c54e821 and 5f25f60480af56b0ce78a5f683ff703272c77409.
The update introduces modifications and enhancements to the Genetic Inheritance Graph Library, focusing on improving functionality and testing. Key changes include returning a new object in the sample_resolve
method for better data management and adding new test methods to ensure robustness in handling multiple chromosomes and sample-related functionalities.
Files | Change Summary |
---|---|
.../graph.py , .../tables.py |
Modified sample_resolve to return new GIG; added find_mrca_regions . |
tests/gigutil.py |
Updated loops, added print statement, adjusted default arguments in run . |
tests/test_gigutil.py |
Added test_multi_chromosomes for no recombination between chromosomes. |
tests/test_graph.py |
New test_samples method for testing sample functionalities. |
gig.sample_resolve
and gig.find_mrca_regions
methods modified in this PR. Improved edge handling could relate to new method implementations and modifications.🐰✨🌟 Changes abound in the code, New tests and methods, oh how they bode! With GIGs and graphs, we refine, In code we trust, let it shine! Hop, hop, hooray, for the coder's ode! 🌟✨🐰
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Summary by CodeRabbit
New Features
Improvements
Tests