coderabbitai[bot]
commented
8 months ago [!WARNING]
Rate Limit Exceeded
@hyanwong has exceeded the limit for the number of commits or files that can be reviewed per hour. Please wait 25 minutes and 5 seconds before requesting another review.
How to resolve this issue?
After the wait time has elapsed, a review can be triggered using the `@coderabbitai review` command as a PR comment. Alternatively, push new commits to this PR. We recommend that you space out your commits to avoid hitting the rate limit.How do rate limits work?
CodeRabbit enforces hourly rate limits for each developer per organization. Our paid plans have higher rate limits than the trial, open-source and free plans. In all cases, we re-allow further reviews after a brief timeout. Please see our [FAQ](https://coderabbit.ai/docs/faq) for further information.Commits
Files that changed from the base of the PR and between ac05dd3bc93527759978807f23e2dc0ab56b9708 and 7f27d24a0c441533d0711c3d7bbb1bc46cb35e94.
Walkthrough
The recent updates in the GeneticInheritanceGraphLibrary focus on enhancing edge sorting logic and data representation for genetic inheritance graphs. Specifically, these changes aim to improve the efficiency and clarity of iterating over edges by modifying how they are ordered and represented, particularly emphasizing the transition to ordering by child node attributes. This shift is designed to streamline forward simulations and data interpretation within the library.
Changes
| Files | Summary |
|---|---|
graph.py, tests/test_graph.py |
Adjusted edge sorting logic, renamed variables, and updated assertions related to edge sorting by parent and child attributes. |
tables.py, tests/test_tables.py |
Changed primary key calculation in sorting, added sorting method calls, modified value orders, and updated sorting logic in iedges. |
README.md |
Documented functionality changes regarding interval storage, table and graph class differences, object access methods, and internal iedges sorting. |
Assessment against linked issues
| Objective | Addressed | Explanation |
|---|---|---|
| Order edges by child time and ID for efficiency in forward simulations (#70) | ✅ | |
| Simplify edge interpretation as intervals in a portion object for clarity (#70) | ✅ | |
| Ensure each child has only one parent at a position to prevent overlaps (#70) | ✅ | |
| Provide a natural order for child edges to enhance code usability (#70) | ✅ | |
| Consider the implications of edge ordering change on existing functionality (#70) | ❓ | The assessment of implications on existing functionality is not fully clear from the summary provided. |
Poem
In the realm of genetic graphs, Where edges twist and turn in paths, A rabbit hopped, with code in hand, To sort by child, a change so grand.
🌟 With each leap forward, edges align, 🐇 Through nodes and times, a dance divine. In code we trust, in change, we thrive, With every hop, our graphs come alive!
Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?
Fixes #70
Summary by CodeRabbit