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hyattpd / Prodigal

Prodigal Gene Prediction Software
GNU General Public License v3.0
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explanation of parameters in node.h file #73

Open pila76 opened 4 years ago

pila76 commented 4 years ago

Hello, Where can I see the explanation of the parameters in the node.h file? Thanks!

tseemann commented 4 years ago

Do you mean these?

define STT_NOD 100000
#define MIN_GENE 90
#define MIN_EDGE_GENE 60
#define MAX_SAM_OVLP 60
#define ST_WINDOW 60
#define OPER_DIST 60
#define EDGE_BONUS 0.74
#define EDGE_UPS -1.00
#define META_PEN 7.5
pila76 commented 4 years ago

yes! Thanks!

On Sun, 1 Mar 2020 at 14:41, Torsten Seemann notifications@github.com wrote:

Do you mean these?

define STT_NOD 100000

define MIN_GENE 90

define MIN_EDGE_GENE 60

define MAX_SAM_OVLP 60

define ST_WINDOW 60

define OPER_DIST 60

define EDGE_BONUS 0.74

define EDGE_UPS -1.00

define META_PEN 7.5

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tseemann commented 4 years ago

Will need the author @hyattpd to explain them.