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hybridLambda / hybrid-Lambda

Hybrid-Lambda is a software package that can simulate gene trees within a rooted species network or a rooted species tree under the Kingman's coalescent or Lambda coalescent process.
http://hybridlambda.github.io/
GNU General Public License v3.0
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negative gene tree branch length when species tree is not ultramatric #30

Closed shajoezhu closed 5 years ago

shajoezhu commented 6 years ago

./hybrid-Lambda -spcu '((t1:0.1870159407,((t3:0.4702698663,t4:0.4137583275):0.2293317991,t5:0.5586353091):0.6865283409):0.8690369658,t2:0.380107421);' -num 20 -seed 98765 -o output

shajoezhu commented 5 years ago

./hybrid-Lambda_dbg -spcu '((t1:0.1870159407,((t3:0.4702698663,t4:0.4137583275):0.2293317991,t5:0.5586353091):0.6865283409):0.8690369658,t2:0.380107421);' -num 2 -seed 98765 -o output

shajoezhu commented 5 years ago

out

shajoezhu commented 5 years ago

fixed by https://github.com/hybridLambda/hybrid-Lambda/commit/936c1dc2f4e53303ee7b66936ee2ba1022001b30