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hydra-genetics
/
biomarker
Collection of rules used to calculate biomarkers like MSI, TMB and HRD.
GNU General Public License v3.0
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feat: update to snakemake 8
#79
Smeds
opened
7 months ago
0
docs: update compatibility information
#78
Smeds
opened
12 months ago
0
ci: test build mkdocs
#77
Smeds
closed
1 year ago
0
fix: rm prefix parameter in optitype
#76
jonca79
opened
1 year ago
0
chore: release 0.4.0
#75
github-actions[bot]
closed
1 year ago
1
feat: Update snakemake version in requirements.txt
#74
jonca79
closed
1 year ago
0
docs: rtd update
#73
jonca79
closed
1 year ago
0
refactor: dev to master
#72
jonca79
closed
1 year ago
0
docs: update rtd links
#71
jonca79
closed
1 year ago
0
feat: added tmb filtering option based on gene names
#70
jonca79
closed
1 year ago
0
fix: add missing file used by readthedocs
#69
Smeds
closed
1 year ago
0
docs: biomarker readthedocs
#68
jonca79
closed
1 year ago
1
feat: update snakemake version, allow range up to version 8
#67
Smeds
closed
1 year ago
0
chore: release 0.3.1
#66
github-actions[bot]
closed
1 year ago
1
chore: dev to master
#65
jonca79
closed
1 year ago
0
fix: added newline between variants
#64
jonca79
closed
1 year ago
0
chore: release 0.3.0
#63
github-actions[bot]
closed
1 year ago
1
feat: add working compatibility test
#62
Smeds
closed
1 year ago
0
feat: remove conda support and testing
#61
Smeds
closed
1 year ago
0
docs: update compatibility
#60
jonca79
closed
1 year ago
0
docs: update readme
#59
jonca79
closed
1 year ago
0
chore: dev to master
#58
jonca79
closed
1 year ago
0
ci: only use mamba
#57
Smeds
closed
1 year ago
0
feat: added more config options for tmb
#56
jonca79
closed
1 year ago
0
feat: improved TMB calculation
#55
jonca79
closed
1 year ago
0
docs: update compatibility versions
#54
Smeds
closed
1 year ago
0
chore: release 0.2.0
#53
github-actions[bot]
closed
1 year ago
1
chore: dev to master
#52
Smeds
closed
1 year ago
0
refactor: remove conda setup from dry-run
#51
Smeds
closed
1 year ago
0
feat: added support for different purity calculations
#50
jonca79
closed
1 year ago
0
test: fix linting
#49
jonca79
closed
1 year ago
0
feat: run TMB without background runs calcualtions
#48
jonca79
closed
1 year ago
0
chore: release 0.1.0
#47
github-actions[bot]
closed
1 year ago
1
chore: dev to master
#46
jonca79
closed
1 year ago
0
fix: integration test conda
#45
Smeds
closed
1 year ago
0
feat: scarhrd
#44
jonca79
closed
2 years ago
0
chore: prepare for first release
#43
Smeds
closed
1 year ago
6
ci: set strict mode for conda
#42
Smeds
closed
2 years ago
0
feat: snakemake version
#41
Smeds
closed
2 years ago
0
feat: make configfile/confgilefiles argument mandatory
#40
Smeds
closed
2 years ago
0
feat: update snakemake-version
#39
Smeds
closed
2 years ago
0
feat: update snakemake-version
#38
Smeds
closed
2 years ago
0
feat: make config.yaml location more flexible
#37
Smeds
closed
2 years ago
0
fix: bug
#36
jonca79
closed
2 years ago
0
Smeds patch 1
#35
Smeds
closed
2 years ago
0
Update snakemake-dry-run.yaml
#34
Smeds
closed
2 years ago
0
fix: new artifact file format
#33
jonca79
closed
2 years ago
0
feat: Optitype
#32
jonca79
closed
2 years ago
0
fix: change type from float to number
#31
jonca79
closed
2 years ago
0
feat: new vaf limit for TMB
#30
jonca79
closed
2 years ago
0
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