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hydrologie / xhydro

Hydrological analysis library built with xarray.
https://xhydro.readthedocs.io
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Bug dans Notebook local_frequency_analysis #105

Closed EdouardMailhot closed 4 months ago

EdouardMailhot commented 4 months ago

Setup Information

Description

J'obtiens une erreur à la ligne:

ds = xd.Query( *{ "datasets":{ "deh":{ "id" :["020"], "regulated":["Natural"], "variables":["streamflow"], } }, "time":{"start": "1970-01-01", "minimum_duration":(15*365, 'd')},

} ).data.squeeze().load()

L'erreur:

ValidationError Traceback (most recent call last) Cell In[2], line 1 ----> 1 ds = xd.Query( 2 *{ 3 "datasets":{ 4 "deh":{ 5 "id" :["020"], 6 "regulated":["Natural"], 7 "variables":["streamflow"], 8 } 9 }, "time":{"start": "1970-01-01", 10 "minimum_duration":(15*365, 'd')}, 11 12 } 13 ).data.squeeze().load() 15 # This dataset lacks some of the aforementioned attributes, so we need to add them. 16 ds["id"].attrs["cf_role"] = "timeseries_id"

File ~\Anaconda3\envs\xhydro-dev\Lib\site-packages\xdatasets\core.py:122, in Query.init(self, datasets, space, time, catalog_path) 119 self.space = self._resolve_space_params(space) 120 self.time = self._resolve_time_params(time) --> 122 self.load_query(datasets=self.datasets, space=self.space, time=self.time)

File ~\Anaconda3\envs\xhydro-dev\Lib\site-packages\xdatasets\core.py:256, in Query.load_query(self, datasets, space, time) 253 except: 254 pass --> 256 ds_one = self._process_one_dataset( 257 dataset_name=dataset_name, 258 variables=variables_name, 259 space=space, 260 time=time, 261 **kwargs, 262 ) 263 dsets.append(ds_one) 265 try: 266 # Try naively merging datasets into single dataset

File ~\Anaconda3\envs\xhydro-dev\Lib\site-packages\xdatasets\core.py:299, in Query._process_one_dataset(self, dataset_name, variables, space, time, **kwargs) 296 dataset_category = "user-provided" 298 elif isinstance(dataset_name, str): --> 299 dataset_category = [ 300 category 301 for category in self.catalog._entries.keys() 302 for name in self.catalog[category]._entries.keys() 303 if name == dataset_name 304 ][0] 306 if dataset_category in ["atmosphere"]: 307 with warnings.catch_warnings():

File ~\Anaconda3\envs\xhydro-dev\Lib\site-packages\xdatasets\core.py:302, in (.0) 296 dataset_category = "user-provided" 298 elif isinstance(dataset_name, str): 299 dataset_category = [ 300 category 301 for category in self.catalog._entries.keys() --> 302 for name in self.catalog[category]._entries.keys() 303 if name == dataset_name 304 ][0] 306 if dataset_category in ["atmosphere"]: 307 with warnings.catch_warnings():

File ~\Anaconda3\envs\xhydro-dev\Lib\site-packages\intake\catalog\base.py:472, in Catalog.getitem(self, key) 463 """Return a catalog entry by name. 464 465 Can also use attribute syntax, like cat.entry_name, or (...) 468 cat['name1', 'name2'] 469 """ 470 if not isinstance(key, list) and key in self: 471 # triggers reload_on_change --> 472 s = self._get_entry(key) 473 if s.container == "catalog": 474 s.name = key

File ~\Anaconda3\envs\xhydro-dev\Lib\site-packages\intake\catalog\utils.py:43, in reload_on_change..wrapper(self, *args, kwargs) 40 @functools.wraps(f) 41 def wrapper(self, *args, *kwargs): 42 self.reload() ---> 43 return f(self, args, kwargs)

File ~\Anaconda3\envs\xhydro-dev\Lib\site-packages\intake\catalog\base.py:355, in Catalog._get_entry(self, name) 353 ups = [up for name, up in self.user_parameters.items() if name not in up_names] 354 entry._user_parameters = ups + (entry._user_parameters or []) --> 355 return entry()

File ~\Anaconda3\envs\xhydro-dev\Lib\site-packages\intake\catalog\entry.py:60, in CatalogEntry.call(self, persist, kwargs) 58 def call(self, persist=None, kwargs): 59 """Instantiate DataSource with given user arguments""" ---> 60 s = self.get(**kwargs) 61 s._entry = self 62 s._passed_kwargs = list(kwargs)

File ~\Anaconda3\envs\xhydro-dev\Lib\site-packages\intake\catalog\local.py:313, in LocalCatalogEntry.get(self, user_parameters) 310 return self._default_source 312 plugin, open_args = self._create_open_args(user_parameters) --> 313 data_source = plugin(open_args) 314 data_source.catalog_object = self._catalog 315 data_source.name = self.name

File ~\Anaconda3\envs\xhydro-dev\Lib\site-packages\intake\catalog\local.py:613, in YAMLFileCatalog.init(self, path, text, autoreload, kwargs) 611 self.filesystem = kwargs.pop("fs", None) 612 self.access = "name" not in kwargs --> 613 super(YAMLFileCatalog, self).init(kwargs)

File ~\Anaconda3\envs\xhydro-dev\Lib\site-packages\intake\catalog\base.py:128, in Catalog.init(self, entries, name, description, metadata, ttl, getenv, getshell, persist_mode, storage_options, user_parameters) 126 self.updated = time.time() 127 self._entries = entries if entries is not None else self._make_entries_container() --> 128 self.force_reload()

File ~\Anaconda3\envs\xhydro-dev\Lib\site-packages\intake\catalog\base.py:186, in Catalog.force_reload(self) 184 """Imperative reload data now""" 185 self.updated = time.time() --> 186 self._load()

File ~\Anaconda3\envs\xhydro-dev\Lib\site-packages\intake\catalog\local.py:648, in YAMLFileCatalog._load(self, reload) 646 logger.warning("Use of '!template' deprecated - fixing") 647 text = text.replace("!template ", "") --> 648 self.parse(text)

File ~\Anaconda3\envs\xhydro-dev\Lib\site-packages\intake\catalog\local.py:728, in YAMLFileCatalog.parse(self, text) 726 result = CatalogParser(data, context=context, getenv=self.getenv, getshell=self.getshell) 727 if result.errors: --> 728 raise exceptions.ValidationError( 729 "Catalog '{}' has validation errors:\n\n{}" 730 "".format(self.path, "\n".join(result.errors)), 731 result.errors, 732 ) 734 cfg = result.data 736 self._entries = {}

ValidationError: Catalog 'C:/Users/maied01/AppData/Local/Temp/catalogs//hydrology.yaml' has validation errors:

("missing 'module'", {'module': 'intake_xarray'})

Steps To Reproduce

No response

Additional context

J'ai créé un environnement conda en suivant les étapes de la procédure et j'ai lancé un Jupyter Notebook en utilisant Anaconda Navigator.

image

Contribution

RondeauG commented 4 months ago

Peux-tu me copier-coller ton conda list ? Le problème est qu'il te manque intake-xarray, mais ça devrait être ajouté quand tu crées l'environnement.

EdouardMailhot commented 4 months ago

Il semble y être.

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RondeauG commented 4 months ago

J'ai la même erreur avec intake 2.0.3. Tous nos environnements utilisent plutôt 0.7.0 (limité par intake-xarray lui-même, je crois). Donc entre temps, conda install "intake==0.7.0" devrait régler le problème... Cela dit, aucune idée pourquoi ton environnement s'est retrouvé avec 2.0.3.

Ça devrait être quelque chose à régler dans xdatasets @sebastienlanglois. La dernière mise à jour de intake_xarray date de 2021. Est-ce que c'est vraiment nécessaire pour xdatasets ?

EDIT: En fait, intake_esm semble être celui qui limite la version de intake à intake>=0.6.6,<2 depuis 3 semaines environ, mais il y a apparemment quelque chose qui brise aussi dans xdatasets.

EdouardMailhot commented 4 months ago

Je suis retourné à intake 0.7.0 et c'est résolu. Merci!